I think with that big of a MC you will have a VERY firm pedal. I have a 1" bore on stock 84 calipers and stock rear drums with all SS braided lines and the pedal is almost too firm for me. I have some 95 V6 4Runner calipers (two large pistons) that are going on eventually, and I'm doing a disc swap in the rear also eventually, so hopefully it will soften up with that setup. Bigger isn't always better... Too much MC and not big enough calipers or wheel cylinders is a bad thing, theres no where for all that fluid movement to go, thus giving you a firmer pedal, and taking more pressure to do the same amount of stopping, which is what happened to me when I went from a 13/16 MC to a 1". Pedal got MUCH firmer, and I have to press pretty damn hard on the brakes to get the truck to stop/lockup. I was tempted to go back to the smaller one just until I got the new calipers in, but decided I was too lazy, haha. Check out the link for some reading about the hydraulic ratios, good info. My truck will work out to just .5 under the stock setup when I go to the larger calipers with my MC and the volume of the rear discs taken into account vs the volume of the rear wheel cylinders so pedal should feel stock, but with bigger brakes
http://home.4x4wire.com/erik/4runner/brakes/
~T.J.