let me ask a couple of questions...
First... did this "noise" only come apparent after the spring change...?
Second... Is this noise you are hearing during acceleration, deceleration, or coasting?
Third... Have the fluid levels (and conditions) been checked?? Look for any serious isues with fluids like discolorations, metal, etc... the usual stuff to keep an eye out for...
Forth... Is the pinion tight?? is there any play in the bearings? are there any leaks at any of the outputs that are new??
If i was closer i would take a peek at it with ya...
i went through a lot of this back in the day with one of my rigs, learned a lot by the time it was all over and done...
and if you are setting up the rear yoke angles, i have never gone more than 1 degree below matched angles to 'allow' or actually 'compensate' for axle wrap... if you are getting more than that, it would be something that would need to be addressed because it would haunt you for a while...