I forget what the differences were... I think the exhaust ports are pear shaped on the later heads and just round on the early ones, but I'm unsure of that. Either way, it sounds like you have an early head... which is a bum deal.
It will run if you put it together with an early (longer) timing chain, but it will miss and generally run like ass, since the compression will be low and the timing will be off due to the difference in the later and earlier blocks (the timing chain will actually be too long if you use an earlier one, since the early blocks were a hair taller as well).
I personally tore down a motor that was built like this by someone who was a supposed "toyota mechanic"... we drove it from Milton-Freewater, OR and made it as far as Yakima before it spun a rod bearing. :masturbanana[1]: